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Question #44987
The Question
A wild-type (WT) transcription factor binds to the major groove of a DNA double helix at and . The binding is driven by specific hydrogen bonds, yielding a standard enthalpy of binding and a standard entropy of binding . The protein's DNA-binding domain is a rigid -helix, constrained by the partial double-bond character of its peptide bonds.
A mutation introduces a highly flexible loop in the unbound protein, increasing its conformational entropy by compared to the WT unbound state. The enthalpy of the unbound state remains unchanged. To achieve the required 'Lock and Key' fit in the major groove, the mutant protein must adopt the exact same rigid bound conformation as the WT protein.
Calculate the standard free energy of binding () for the mutant protein at .
Options
- A.
- B.
- C.
- D.
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Correct Answer
Step-by-Step Solution
Explanation
How the Examiner Thinks
Numerical_Precision
Improve calculation stamina and avoid rounding errors in high-stakes competitive examinations.
Concepts Behind This Question
Base Pairing Stability|Peptide Bond Planarity|Protein Denaturation Specificity
Why This Question Is Tricky
Common Mistakes
The problem tests the concept of conformational entropy in protein-DNA interactions (Lock and Key model).
Students often assume that strong hydrogen bonding (large negative ) guarantees binding.
The hidden variable is the massive entropic penalty () incurred when a flexible mutant state must be forced into a rigid, planar peptide-bond constrained conformation to fit the DNA major groove.
Failing to subtract this increased unbound entropy from the binding entropy leads to incorrect thermodynamic predictions.
Quick Facts About This Question
Question Information
| Subject | Chemistry |
| Chapter | Biomolecules - Class 12 |
| Concept | Base Pairing Stability |
| Difficulty | 8 |
| Cognitive Load | 7 |
| Target Solve Time | 160 sec |
| Access | Free |