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Question #44987

Difficulty: 8/10 | 🟢 Free

The Question

A wild-type (WT) transcription factor binds to the major groove of a DNA double helix at 298 K298 \text{ K} and 1 bar1 \text{ bar}. The binding is driven by specific hydrogen bonds, yielding a standard enthalpy of binding ΔHbind∘=−90.0 kJ mol−1\Delta H^\circ_{\text{bind}} = -90.0 \text{ kJ mol}^{-1} and a standard entropy of binding ΔSbind∘=−200 J K−1 mol−1\Delta S^\circ_{\text{bind}} = -200 \text{ J K}^{-1} \text{ mol}^{-1}. The protein's DNA-binding domain is a rigid α\alpha-helix, constrained by the partial double-bond character of its peptide bonds.

A mutation introduces a highly flexible loop in the unbound protein, increasing its conformational entropy by 120 J K−1 mol−1120 \text{ J K}^{-1} \text{ mol}^{-1} compared to the WT unbound state. The enthalpy of the unbound state remains unchanged. To achieve the required 'Lock and Key' fit in the major groove, the mutant protein must adopt the exact same rigid bound conformation as the WT protein.

Calculate the standard free energy of binding (ΔGbind∘\Delta G^\circ_{\text{bind}}) for the mutant protein at 298 K298 \text{ K}.

Options

  • A.

    +5.36 kJ mol−1+5.36 \text{ kJ mol}^{-1}

  • B.

    −30.40 kJ mol−1-30.40 \text{ kJ mol}^{-1}

  • C.

    −66.16 kJ mol−1-66.16 \text{ kJ mol}^{-1}

  • D.

    +35.76 kJ mol−1+35.76 \text{ kJ mol}^{-1}

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Correct Answer

Step-by-Step Solution

Explanation

How the Examiner Thinks

Numerical_Precision

Improve calculation stamina and avoid rounding errors in high-stakes competitive examinations.

Concepts Behind This Question

Base Pairing Stability|Peptide Bond Planarity|Protein Denaturation Specificity

Why This Question Is Tricky

Common Mistakes

The problem tests the concept of conformational entropy in protein-DNA interactions (Lock and Key model).

Students often assume that strong hydrogen bonding (large negative ΔH\Delta H) guarantees binding.

The hidden variable is the massive entropic penalty (ΔΔS\Delta \Delta S) incurred when a flexible mutant state must be forced into a rigid, planar peptide-bond constrained conformation to fit the DNA major groove.

Failing to subtract this increased unbound entropy from the binding entropy leads to incorrect thermodynamic predictions.

Quick Facts About This Question

Question Information

SubjectChemistry
ChapterBiomolecules - Class 12
ConceptBase Pairing Stability
Difficulty8
Cognitive Load7
Target Solve Time160 sec
AccessFree